Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transporter, major facilitator family protein | HMPREF1862_00283 | Not Available | Positive | 295065 - 296429 | 48610.7 |
| hypothetical protein | HMPREF1862_00284 | Not Available | Positive | 296529 - 297281 | 28936.4 |
| inositol monophosphatase family protein | HMPREF1862_00285 | Not Available | Positive | 297291 - 298070 | 28152.7 |
| phosphorylase, glycogen/starch/alpha-glucan family | HMPREF1862_00286 | Not Available | Negative | 298326 - 300617 | 87639.0 |
| alpha amylase, catalytic domain protein | HMPREF1862_00287 | Not Available | Negative | 300868 - 302601 | 64267.8 |
| dead/deah box helicase | HMPREF1862_00289 | Not Available | Negative | 302633 - 304237 | 58457.7 |
| hypothetical protein | HMPREF1862_00288 | Not Available | Positive | 304216 - 304407 | 7068.5 |
| hypothetical protein | HMPREF1862_00290 | Not Available | Positive | 304512 - 305117 | 22387.8 |
| hypothetical protein | HMPREF1862_00291 | Not Available | Negative | 305268 - 305495 | 8103.91 |
| hypothetical protein | HMPREF1862_00292 | Not Available | Positive | 305597 - 305725 | 4726.55 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
