Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine--trna ligase | HMPREF1862_00273 | Not Available | Positive | 283785 - 285179 | 53074.4 |
| tat pathway signal sequence domain protein | HMPREF1862_00274 | Not Available | Positive | 285280 - 286542 | 44240.0 |
| tim-barrel protein, nifr3 family | HMPREF1862_00275 | Not Available | Positive | 286532 - 287746 | 43894.4 |
| putative dgtpase | HMPREF1862_00276 | Not Available | Positive | 287782 - 289035 | 46630.9 |
| dna primase | HMPREF1862_00277 | Not Available | Positive | 289085 - 291106 | 73129.8 |
| hypothetical protein | HMPREF1862_00278 | Not Available | Positive | 291326 - 291586 | 8826.54 |
| diaminopimelate dehydrogenase | HMPREF1862_00279 | Not Available | Negative | 291787 - 292761 | 34923.1 |
| putative glucosamine-6-phosphate deaminase | HMPREF1862_00280 | Not Available | Negative | 292858 - 293643 | 28272.5 |
| hypothetical protein | HMPREF1862_00282 | Not Available | Negative | 293724 - 293846 | 4827.73 |
| sugar-binding domain protein | HMPREF1862_00281 | Not Available | Positive | 293838 - 294881 | 37488.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
