Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transporter, dicarboxylate/amino acid:cation na+/h+ symporter family protein | HMPREF1862_00263 | Not Available | Positive | 274804 - 276054 | 43018.1 |
| histidinol-phosphate transaminase | HMPREF1862_00264 | Not Available | Positive | 276162 - 277313 | 42102.2 |
| imidazoleglycerol-phosphate dehydratase | HMPREF1862_00265 | Not Available | Positive | 277310 - 277909 | 21421.6 |
| hypothetical protein | HMPREF1862_00266 | Not Available | Positive | 277906 - 278673 | 28271.8 |
| imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | HMPREF1862_00267 | Not Available | Positive | 278666 - 279304 | 22917.5 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | HMPREF1862_00268 | Not Available | Positive | 279314 - 280039 | 25532.4 |
| hypothetical protein | HMPREF1862_00269 | Not Available | Positive | 280020 - 280829 | 28104.8 |
| abc 3 transport family protein | HMPREF1862_00270 | Not Available | Negative | 280860 - 281852 | 34084.4 |
| abc transporter, atp-binding protein | HMPREF1862_00271 | Not Available | Negative | 281852 - 282586 | 25911.4 |
| abc transporter, substrate-binding protein | HMPREF1862_00272 | Not Available | Negative | 282577 - 283554 | 35035.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
