Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminotransferase, class v | HMPREF1862_00253 | Not Available | Positive | 265325 - 266572 | 42493.5 |
| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase | HMPREF1862_00254 | Not Available | Positive | 266573 - 267679 | 39507.0 |
| Trna-leu | Not Available | Not Available | Positive | 267733 - 267817 | Not Available |
| putative peroxiredoxin bcp | HMPREF1862_00256 | Not Available | Positive | 267921 - 268397 | 17217.6 |
| Trna-lys | Not Available | Not Available | Positive | 268446 - 268522 | Not Available |
| Trna-lys | Not Available | Not Available | Positive | 268545 - 268621 | Not Available |
| dna polymerase iii, alpha subunit | HMPREF1862_00259 | Not Available | Positive | 268747 - 272295 | 131890.0 |
| s4 domain protein | HMPREF1862_00260 | Not Available | Negative | 272315 - 272557 | 8231.8 |
| hypothetical protein | HMPREF1862_00261 | Not Available | Positive | 272619 - 273380 | 27663.2 |
| histidinol dehydrogenase | HMPREF1862_00262 | Not Available | Positive | 273459 - 274784 | 46724.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
