Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| maltose alpha-d-glucosyltransferase | HMPREF1862_00243 | Not Available | Negative | 253198 - 255108 | 72056.4 |
| alpha amylase, catalytic domain protein | HMPREF1862_00244 | Not Available | Negative | 255132 - 257429 | 85550.8 |
| hypothetical protein | HMPREF1862_00245 | Not Available | Negative | 257564 - 258229 | 24292.2 |
| tryptophan--trna ligase | HMPREF1862_00246 | Not Available | Negative | 258234 - 259337 | 40586.6 |
| hypothetical protein | HMPREF1862_00247 | Not Available | Positive | 259414 - 259536 | 4529.59 |
| type i restriction modification dna specificity domain protein | HMPREF1862_00248 | Not Available | Negative | 259708 - 260835 | 42074.5 |
| hypothetical protein | HMPREF1862_00249 | Not Available | Negative | 261008 - 261130 | 4557.78 |
| glycogen debranching enzyme glgx | HMPREF1862_00250 | Not Available | Negative | 261153 - 263402 | 83044.2 |
| electron transfer flavoprotein | HMPREF1862_00251 | Not Available | Positive | 263544 - 264332 | 27857.0 |
| electron transfer flavoprotein fad-binding domain protein | HMPREF1862_00252 | Not Available | Positive | 264342 - 265325 | 34223.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
