Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-2 type transporter | HMPREF1862_00233 | Not Available | Negative | 235667 - 236815 | 41395.8 |
| abc-2 type transporter | HMPREF1862_00234 | Not Available | Negative | 236802 - 238061 | 45395.1 |
| putative abc transporter, atp-binding protein sagg | HMPREF1862_00235 | Not Available | Negative | 238064 - 239002 | 35099.4 |
| ybak/ebsc protein | HMPREF1862_00236 | Not Available | Positive | 239112 - 239705 | 21246.1 |
| manganese transport protein mnth | HMPREF1862_00237 | Not Available | Positive | 239884 - 241146 | 43829.0 |
| 1,4-alpha-glucan branching enzyme | HMPREF1862_00238 | Not Available | Negative | 241312 - 243495 | 82796.2 |
| glutamate dehydrogenase | HMPREF1862_00239 | Not Available | Negative | 243640 - 244896 | 45596.5 |
| transcriptional regulator, fis family | HMPREF1862_00240 | Not Available | Positive | 245113 - 246609 | 53934.0 |
| cna protein b-type domain protein | HMPREF1862_00241 | Not Available | Negative | 246606 - 251753 | 176216.0 |
| hypothetical protein | HMPREF1862_00242 | Not Available | Negative | 251871 - 253214 | 49719.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
