Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acylglucosamine 2-epimerase | HMPREF1862_00223 | Not Available | Positive | 225195 - 226520 | 50785.0 |
| Trna-ser | Not Available | Not Available | Positive | 226577 - 226666 | Not Available |
| galactokinase | HMPREF1862_00225 | Not Available | Negative | 226757 - 228058 | 46642.4 |
| putative thioredoxin | HMPREF1862_00226 | Not Available | Negative | 228134 - 229060 | 33501.5 |
| hypothetical protein | HMPREF1862_00227 | Not Available | Negative | 229073 - 230080 | 35526.8 |
| hypothetical protein | HMPREF1862_00228 | Not Available | Negative | 230077 - 231144 | 38483.5 |
| hypothetical protein | HMPREF1862_00229 | Not Available | Positive | 231552 - 232937 | 50830.3 |
| hypothetical protein | HMPREF1862_00230 | Not Available | Negative | 233092 - 234456 | 46267.9 |
| act domain protein | HMPREF1862_00231 | Not Available | Negative | 234507 - 234836 | 12193.0 |
| cadmium resistance transporter | HMPREF1862_00232 | Not Available | Positive | 234877 - 235485 | 21639.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
