Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter, substrate-binding protein, thib family | HMPREF1862_00213 | Not Available | Positive | 209503 - 210570 | 38329.5 |
| abc transporter, permease protein | HMPREF1862_00214 | Not Available | Positive | 210578 - 212248 | 59255.8 |
| sulfate/thiosulfate abc transporter, atp-binding protein cysa family protein | HMPREF1862_00215 | Not Available | Positive | 212248 - 213258 | 36209.4 |
| hypothetical protein | HMPREF1862_00216 | Not Available | Negative | 213219 - 214991 | 64063.7 |
| glycosyltransferase, group 2 family protein | HMPREF1862_00217 | Not Available | Positive | 215257 - 216099 | 30319.8 |
| hypothetical protein | HMPREF1862_00218 | Not Available | Negative | 216042 - 220640 | 163013.0 |
| prephenate dehydratase | HMPREF1862_00219 | Not Available | Positive | 220719 - 221651 | 33798.1 |
| diacylglycerol kinase catalytic domain protein | HMPREF1862_00220 | Not Available | Negative | 221677 - 222762 | 38457.8 |
| serine--trna ligase | HMPREF1862_00221 | Not Available | Positive | 222924 - 224207 | 47111.1 |
| quinolinate phosphoribosyl transferase protein | HMPREF1862_00222 | Not Available | Positive | 224290 - 225150 | 31115.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
