Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerol-3-phosphate dehydrogenase | HMPREF1862_00203 | Not Available | Negative | 198803 - 200449 | 60274.5 |
| hypothetical protein | HMPREF1862_00204 | Not Available | Negative | 200446 - 200667 | 8404.29 |
| abc transporter, atp-binding protein | HMPREF1862_00205 | Not Available | Negative | 200807 - 201781 | 35319.9 |
| abc transporter, solute-binding protein | HMPREF1862_00206 | Not Available | Negative | 201967 - 203268 | 47019.0 |
| abc transporter, permease protein | HMPREF1862_00207 | Not Available | Negative | 203292 - 204179 | 32590.8 |
| abc transporter, permease protein | HMPREF1862_00208 | Not Available | Negative | 204176 - 204988 | 30398.5 |
| dctp deaminase | HMPREF1862_00209 | Not Available | Positive | 205348 - 205944 | 21935.1 |
| hypothetical protein | HMPREF1862_00210 | Not Available | Positive | 205941 - 207092 | 41285.0 |
| transporter, major facilitator family protein | HMPREF1862_00211 | Not Available | Positive | 207258 - 208994 | 62254.2 |
| hypothetical protein | HMPREF1862_00212 | Not Available | Positive | 209029 - 209298 | 9312.23 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
