Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| toxin-antitoxin system, toxin component, rele domain protein | HMPREF1862_00193 | Not Available | Positive | 191352 - 191495 | 5420.35 |
| hypothetical protein | HMPREF1862_00194 | Not Available | Negative | 191692 - 192675 | 37756.0 |
| addiction module toxin, rele/stbe family | HMPREF1862_00195 | Not Available | Negative | 192695 - 192979 | 11234.6 |
| addiction module antitoxin, relb/dinj family | HMPREF1862_00196 | Not Available | Negative | 192966 - 193229 | 9616.3 |
| hypothetical protein | HMPREF1862_00197 | Not Available | Positive | 193345 - 193521 | 6463.7 |
| lpxtg-motif protein cell wall anchor domain protein | HMPREF1862_00198 | Not Available | Positive | 193543 - 195354 | 65220.6 |
| Trna-gly | Not Available | Not Available | Positive | 195633 - 195706 | Not Available |
| hydrolase, nudix family | HMPREF1862_00200 | Not Available | Positive | 195842 - 196261 | 15445.0 |
| glycerol-3-phosphate dehydrogenase | HMPREF1862_00201 | Not Available | Negative | 196319 - 197566 | 45436.1 |
| glycerol-3-phosphate dehydrogenase | HMPREF1862_00202 | Not Available | Negative | 197559 - 198806 | 44898.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
