Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative signal-transduction histidine kinase senx3 | HMPREF1862_01991 | Not Available | Negative | 2080684 - 2081772 | 40014.2 |
| phosphate abc transporter, atp-binding protein | HMPREF1862_01992 | Not Available | Negative | 2081959 - 2082738 | 28489.5 |
| phosphate abc transporter, permease protein psta | HMPREF1862_01993 | Not Available | Negative | 2082796 - 2083935 | 40186.8 |
| phosphate abc transporter, permease protein pstc | HMPREF1862_01994 | Not Available | Negative | 2083936 - 2084907 | 34525.3 |
| phosphate abc transporter, phosphate-binding protein psts | HMPREF1862_01995 | Not Available | Negative | 2084987 - 2086087 | 38000.3 |
| methyltransferase domain protein | HMPREF1862_01996 | Not Available | Negative | 2086245 - 2087036 | 28616.5 |
| hypothetical protein | HMPREF1862_01997 | Not Available | Negative | 2087029 - 2087697 | 24470.2 |
| dna replication and repair protein recf | HMPREF1862_01998 | Not Available | Negative | 2087694 - 2089022 | 47949.0 |
| dna polymerase iii, beta subunit | HMPREF1862_01999 | Not Available | Negative | 2089050 - 2090183 | 41056.9 |
| abc transporter, atp-binding protein | HMPREF1862_02000 | Not Available | Negative | 2090397 - 2091182 | 28629.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
