Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative ferrichrome abc transporter, atp-binding protein fhuc | HMPREF1862_01981 | Not Available | Positive | 2071042 - 2071821 | 28684.8 |
| kinase, pfkb family | HMPREF1862_01982 | Not Available | Positive | 2071969 - 2072865 | 31683.5 |
| putative fructose transport system kinase | HMPREF1862_01983 | Not Available | Negative | 2072862 - 2073449 | 21881.3 |
| Trna-ala | Not Available | Not Available | Positive | 2073802 - 2073877 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 2074045 - 2074118 | Not Available |
| hypothetical protein | HMPREF1862_01986 | Not Available | Negative | 2074243 - 2074953 | 25193.9 |
| dna gyrase, a subunit | HMPREF1862_01987 | Not Available | Negative | 2074968 - 2077634 | 98138.8 |
| dna gyrase, b subunit | HMPREF1862_01988 | Not Available | Negative | 2077647 - 2079671 | 74610.0 |
| hypothetical protein | HMPREF1862_01989 | Not Available | Positive | 2079853 - 2080011 | 5819.86 |
| sensory transduction protein regx3 | HMPREF1862_01990 | Not Available | Negative | 2080004 - 2080687 | 26086.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
