Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc 3 transport family protein | HMPREF1862_00183 | Not Available | Negative | 182000 - 182863 | 30637.0 |
| abc 3 transport family protein | HMPREF1862_00184 | Not Available | Negative | 182860 - 184005 | 39991.4 |
| putative manganese transport system atp-binding protein mnta | HMPREF1862_00185 | Not Available | Negative | 184002 - 184712 | 25547.1 |
| abc transporter, substrate-binding protein | HMPREF1862_00186 | Not Available | Negative | 184906 - 185844 | 33835.3 |
| hypothetical protein | HMPREF1862_00187 | Not Available | Negative | 186226 - 187683 | 52493.6 |
| putative lipoprotein releasing system, atp-binding protein | HMPREF1862_00188 | Not Available | Negative | 187684 - 188394 | 25411.8 |
| hypothetical protein | HMPREF1862_00189 | Not Available | Positive | 188588 - 188899 | 11627.6 |
| abc transporter, atp-binding protein | HMPREF1862_00190 | Not Available | Positive | 189093 - 190718 | 59524.3 |
| hypothetical protein | HMPREF1862_00191 | Not Available | Negative | 190734 - 190853 | 4792.83 |
| addiction module antitoxin, relb/dinj family | HMPREF1862_00192 | Not Available | Positive | 190923 - 191195 | 9850.67 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
