Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux abc transporter, permease protein | HMPREF1862_01971 | Not Available | Positive | 2058547 - 2059818 | 45472.7 |
| hypothetical protein | HMPREF1862_01973 | Not Available | Negative | 2059811 - 2059966 | 5889.17 |
| efflux abc transporter, permease protein | HMPREF1862_01972 | Not Available | Positive | 2059945 - 2061027 | 36751.7 |
| abc transporter, atp-binding protein | HMPREF1862_01974 | Not Available | Positive | 2061036 - 2061668 | 22876.5 |
| abc transporter, atp-binding protein | HMPREF1862_01975 | Not Available | Negative | 2061798 - 2063525 | 62925.9 |
| abc transporter, atp-binding protein | HMPREF1862_01976 | Not Available | Negative | 2063532 - 2065241 | 60396.7 |
| ycao-like family protein | HMPREF1862_01977 | Not Available | Negative | 2065300 - 2067510 | 81292.3 |
| peptidase, s9a/b/c family, catalytic domain protein | HMPREF1862_01978 | Not Available | Positive | 2067836 - 2069017 | 44043.9 |
| iron chelate uptake abc transporter, fect family, permease protein | HMPREF1862_01979 | Not Available | Positive | 2069011 - 2070033 | 34867.9 |
| periplasmic binding protein | HMPREF1862_01980 | Not Available | Positive | 2070048 - 2071037 | 35055.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
