Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uroporphyrinogen decarboxylase | HMPREF1862_01961 | Not Available | Positive | 2047393 - 2048427 | 37512.7 |
| hydroxymethylbilane synthase | HMPREF1862_01962 | Not Available | Positive | 2048499 - 2051054 | 88307.1 |
| uroporphyrinogen-iii synthase | HMPREF1862_01963 | Not Available | Positive | 2051091 - 2051843 | 26116.4 |
| hypothetical protein | HMPREF1862_01964 | Not Available | Positive | 2051971 - 2052843 | 31810.5 |
| hypothetical protein | HMPREF1862_01965 | Not Available | Positive | 2052967 - 2053128 | 6091.5 |
| glutamine synthetase, type i | HMPREF1862_01966 | Not Available | Positive | 2053172 - 2054593 | 52720.2 |
| hypothetical protein | HMPREF1862_01967 | Not Available | Negative | 2054698 - 2054901 | 7233.18 |
| porphobilinogen synthase | HMPREF1862_01968 | Not Available | Positive | 2054998 - 2055993 | 35873.6 |
| nuclease, recb family | HMPREF1862_01969 | Not Available | Positive | 2056002 - 2057576 | 58820.5 |
| hypothetical protein | HMPREF1862_01970 | Not Available | Positive | 2057722 - 2058246 | 18665.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
