Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cation diffusion facilitator family transporter | HMPREF1862_01941 | Not Available | Positive | 2027337 - 2028338 | 35682.2 |
| phosphoenolpyruvate carboxykinase | HMPREF1862_01942 | Not Available | Negative | 2028597 - 2030426 | 67677.9 |
| hypothetical protein | HMPREF1862_01943 | Not Available | Positive | 2030655 - 2030783 | 4210.87 |
| hypothetical protein | HMPREF1862_01944 | Not Available | Positive | 2030797 - 2031483 | 25268.6 |
| hypothetical protein | HMPREF1862_01945 | Not Available | Positive | 2032271 - 2032777 | 19092.5 |
| helicase/secretion neighborhood atpase | HMPREF1862_01946 | Not Available | Positive | 2032774 - 2033997 | 43067.3 |
| hypothetical protein | HMPREF1862_01947 | Not Available | Positive | 2034105 - 2034668 | 19338.7 |
| hypothetical protein | HMPREF1862_01948 | Not Available | Positive | 2034665 - 2035198 | 18683.1 |
| branched-chain amino acid transport system ii carrier protein | HMPREF1862_01950 | Not Available | Negative | 2035195 - 2036637 | 51172.7 |
| hypothetical protein | HMPREF1862_01949 | Not Available | Positive | 2036622 - 2036786 | 6129.68 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
