Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative thiamine-phosphate kinase | HMPREF1862_01931 | Not Available | Positive | 2020887 - 2021771 | 30173.7 |
| Trna-phe | Not Available | Not Available | Positive | 2021809 - 2021884 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 2021905 - 2021978 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 2022009 - 2022084 | Not Available |
| transporter, small conductance mechanosensitive ion channel mscs family protein | HMPREF1862_01935 | Not Available | Positive | 2022251 - 2023435 | 43349.8 |
| methionine-r-sulfoxide reductase | HMPREF1862_01936 | Not Available | Positive | 2023439 - 2023840 | 15286.5 |
| endonuclease/exonuclease/phosphatase family protein | HMPREF1862_01937 | Not Available | Positive | 2023842 - 2024675 | 30274.4 |
| putative membrane protein | HMPREF1862_01938 | Not Available | Positive | 2024688 - 2025584 | 31576.7 |
| transglycosylase associated family protein | HMPREF1862_01939 | Not Available | Positive | 2025604 - 2025855 | 8565.14 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | HMPREF1862_01940 | Not Available | Negative | 2026395 - 2027315 | 34324.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
