Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh dehydrogenase, c subunit | HMPREF1862_01901 | Not Available | Negative | 1991260 - 1992012 | 28184.8 |
| putative nadh dehydrogenase i subunit b | HMPREF1862_01902 | Not Available | Negative | 1992009 - 1992569 | 20425.1 |
| nadh dehydrogenase subunit a | HMPREF1862_01903 | Not Available | Negative | 1992591 - 1992959 | 13453.0 |
| geranylgeranyl reductase family protein | HMPREF1862_01904 | Not Available | Negative | 1993063 - 1994442 | 49974.5 |
| ubiquinone/menaquinone biosynthesis methyltransferase | HMPREF1862_01905 | Not Available | Negative | 1994644 - 1995294 | 24068.6 |
| had hydrolase, family ib | HMPREF1862_01906 | Not Available | Negative | 1995393 - 1996148 | 28188.3 |
| phosphoglycerate mutase family protein | HMPREF1862_01907 | Not Available | Positive | 1996221 - 1996940 | 26528.9 |
| hypothetical protein | HMPREF1862_01908 | Not Available | Negative | 1997022 - 1997540 | 18879.2 |
| 1,4-dihydroxy-2-naphthoate octaprenyltransferase | HMPREF1862_01909 | Not Available | Negative | 1997577 - 1998467 | 31196.7 |
| hypothetical protein | HMPREF1862_01910 | Not Available | Negative | 1998551 - 2000278 | 61426.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
