Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01881 | Not Available | Negative | 1965354 - 1965539 | 6784.24 |
| hypothetical protein | HMPREF1862_01882 | Not Available | Negative | 1965563 - 1966714 | 42789.1 |
| hypothetical protein | HMPREF1862_01883 | Not Available | Negative | 1966724 - 1967968 | 44104.1 |
| fad binding domain protein | HMPREF1862_01884 | Not Available | Negative | 1968067 - 1971087 | 107753.0 |
| pyruvate, phosphate dikinase | HMPREF1862_01885 | Not Available | Negative | 1971499 - 1974228 | 98718.4 |
| hypothetical protein | HMPREF1862_01886 | Not Available | Negative | 1974414 - 1974620 | 7651.11 |
| hypothetical protein | HMPREF1862_01887 | Not Available | Positive | 1974628 - 1975326 | 24859.3 |
| hypothetical protein | HMPREF1862_01888 | Not Available | Positive | 1975397 - 1975684 | 10787.1 |
| polyprenyl synthetase | HMPREF1862_01889 | Not Available | Negative | 1975681 - 1976691 | 36273.2 |
| proton-translocating nadh-quinone oxidoreductase, chain | HMPREF1862_01890 | Not Available | Negative | 1976688 - 1978274 | 56428.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
