Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, deor family | HMPREF1862_00170 | Not Available | Negative | 162822 - 163625 | 29142.1 |
| tat pathway signal sequence domain protein | HMPREF1862_00171 | Not Available | Positive | 163750 - 165027 | 45701.4 |
| hypothetical protein | HMPREF1862_00172 | Not Available | Negative | 165121 - 166350 | 43807.6 |
| hypothetical protein | HMPREF1862_00176 | Not Available | Positive | 172206 - 172385 | 6186.23 |
| imelysin | HMPREF1862_00177 | Not Available | Positive | 172448 - 173686 | 45453.5 |
| putative tat-translocated enzyme | HMPREF1862_00178 | Not Available | Positive | 173699 - 175057 | 49252.4 |
| transporter, major facilitator family protein | HMPREF1862_00179 | Not Available | Positive | 175255 - 176445 | 42146.6 |
| transporter, major facilitator family protein | HMPREF1862_00180 | Not Available | Positive | 176645 - 177784 | 40261.4 |
| putative aldehyde-alcohol dehydrogenase 2 | HMPREF1862_00181 | Not Available | Positive | 178063 - 180690 | 93564.0 |
| kinase, pfkb family | HMPREF1862_00182 | Not Available | Negative | 180774 - 181739 | 33686.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
