Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01871 | Not Available | Negative | 1952528 - 1954849 | 81418.8 |
| abc transporter, substrate-binding protein, family 3 | HMPREF1862_01872 | Not Available | Positive | 1955011 - 1955928 | 31982.2 |
| abc transporter, permease protein | HMPREF1862_01873 | Not Available | Positive | 1955953 - 1956909 | 35086.7 |
| abc transporter, atp-binding protein | HMPREF1862_01874 | Not Available | Positive | 1956906 - 1957751 | 31195.7 |
| abc transporter, atp-binding protein | HMPREF1862_01875 | Not Available | Negative | 1957829 - 1959475 | 59813.5 |
| hypothetical protein | HMPREF1862_01876 | Not Available | Negative | 1959551 - 1959724 | 6430.64 |
| abc transporter, atp-binding protein | HMPREF1862_01877 | Not Available | Negative | 1959721 - 1961502 | 64897.8 |
| ribosomal protein l7/l12 | HMPREF1862_01878 | Not Available | Negative | 1961806 - 1962195 | 13387.9 |
| ribosomal protein l10 | HMPREF1862_01879 | Not Available | Negative | 1962262 - 1962846 | 20856.3 |
| putative aerobic c4-dicarboxylate transport protein | HMPREF1862_01880 | Not Available | Positive | 1963600 - 1965111 | 53685.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
