Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| kinase domain protein | HMPREF1862_01861 | Not Available | Positive | 1944192 - 1946120 | 68850.5 |
| putative serine/threonine-protein kinase prkc | HMPREF1862_01862 | Not Available | Positive | 1946096 - 1947916 | 64309.4 |
| hypothetical protein | HMPREF1862_01863 | Not Available | Negative | 1947970 - 1948164 | 7212.06 |
| sortase family protein | HMPREF1862_01864 | Not Available | Negative | 1948152 - 1948904 | 27928.5 |
| hypothetical protein | HMPREF1862_01865 | Not Available | Positive | 1949058 - 1949327 | 9824.11 |
| putative inositol 2-dehydrogenase | HMPREF1862_01866 | Not Available | Positive | 1949564 - 1950556 | 35763.5 |
| ap endonuclease, family 2 | HMPREF1862_01867 | Not Available | Positive | 1950702 - 1951565 | 31119.3 |
| Trna-met | Not Available | Not Available | Positive | 1952076 - 1952149 | Not Available |
| Trna-thr | Not Available | Not Available | Positive | 1952176 - 1952251 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 1952346 - 1952427 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
