Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter, atp-binding protein | HMPREF1862_01851 | Not Available | Negative | 1933712 - 1935397 | 60271.0 |
| hypothetical protein | HMPREF1862_01852 | Not Available | Positive | 1935504 - 1936166 | 23917.6 |
| putative permease | HMPREF1862_01853 | Not Available | Negative | 1936211 - 1937608 | 48369.4 |
| hypothetical protein | HMPREF1862_01854 | Not Available | Positive | 1937766 - 1938260 | 17599.0 |
| Trna-leu | Not Available | Not Available | Positive | 1938261 - 1938349 | Not Available |
| fha domain protein | HMPREF1862_01856 | Not Available | Positive | 1938696 - 1939391 | 24869.2 |
| fha domain protein | HMPREF1862_01857 | Not Available | Positive | 1939404 - 1939895 | 18007.0 |
| protein phosphatase 2c | HMPREF1862_01858 | Not Available | Positive | 1939892 - 1941088 | 42623.2 |
| cell cycle protein, ftsw/roda/spove family | HMPREF1862_01859 | Not Available | Positive | 1941163 - 1942743 | 56144.6 |
| penicillin-binding protein, transpeptidase domain protein | HMPREF1862_01860 | Not Available | Positive | 1942727 - 1944199 | 52086.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
