Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-arg | Not Available | Not Available | Positive | 1917043 - 1917118 | Not Available |
| arginine repressor | HMPREF1862_01842 | Not Available | Negative | 1917355 - 1917849 | 17879.5 |
| arginine--trna ligase | HMPREF1862_01843 | Not Available | Negative | 1917865 - 1919535 | 60886.9 |
| fructosamine kinase | HMPREF1862_01844 | Not Available | Positive | 1919620 - 1920480 | 30779.4 |
| hypothetical protein | HMPREF1862_01845 | Not Available | Positive | 1920589 - 1921137 | 20698.4 |
| trypsin | HMPREF1862_01846 | Not Available | Positive | 1921283 - 1922728 | 49721.4 |
| hypothetical protein | HMPREF1862_01847 | Not Available | Negative | 1922789 - 1923931 | 40714.4 |
| dna-directed rna polymerase, beta' subunit | HMPREF1862_01848 | Not Available | Negative | 1924110 - 1928006 | 144375.0 |
| dna-directed rna polymerase, beta subunit | HMPREF1862_01849 | Not Available | Negative | 1928037 - 1931459 | 126359.0 |
| thiol reductant abc exporter, cydc subunit | HMPREF1862_01850 | Not Available | Negative | 1931835 - 1933715 | 67793.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
