Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tat pathway signal sequence domain protein | HMPREF1862_01831 | Not Available | Negative | 1911562 - 1912197 | 22670.7 |
| hypothetical protein | HMPREF1862_01832 | Not Available | Negative | 1912276 - 1912522 | 8086.59 |
| hypothetical protein | HMPREF1862_01833 | Not Available | Negative | 1912530 - 1913162 | 21264.2 |
| hypothetical protein | HMPREF1862_01834 | Not Available | Negative | 1913152 - 1913286 | 5128.94 |
| hypothetical protein | HMPREF1862_01835 | Not Available | Negative | 1913473 - 1914486 | 36672.6 |
| hypothetical protein | HMPREF1862_01836 | Not Available | Negative | 1914487 - 1914774 | 10416.8 |
| hypothetical protein | HMPREF1862_01837 | Not Available | Negative | 1914758 - 1915891 | 41453.0 |
| toxin-antitoxin system, antitoxin component, phd domain protein | HMPREF1862_01838 | Not Available | Negative | 1915888 - 1916109 | 7389.8 |
| hypothetical protein | HMPREF1862_01839 | Not Available | Positive | 1916264 - 1916635 | 13278.9 |
| dna-binding helix-turn-helix protein | HMPREF1862_01840 | Not Available | Positive | 1916698 - 1917087 | 13810.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
