Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01801 | Not Available | Positive | 1887977 - 1888789 | 30406.5 |
| hypothetical protein | HMPREF1862_01802 | Not Available | Negative | 1889020 - 1889139 | 4516.65 |
| hypothetical protein | HMPREF1862_01803 | Not Available | Positive | 1889441 - 1889821 | 14015.0 |
| hypothetical protein | HMPREF1862_01804 | Not Available | Positive | 1889850 - 1890428 | 22221.6 |
| hypothetical protein | HMPREF1862_01805 | Not Available | Positive | 1890515 - 1890937 | 16278.7 |
| lpxtg-motif protein cell wall anchor domain protein | HMPREF1862_01806 | Not Available | Negative | 1891163 - 1891762 | 20856.2 |
| hypothetical protein | HMPREF1862_01807 | Not Available | Negative | 1891725 - 1891979 | 9266.01 |
| hypothetical protein | HMPREF1862_01808 | Not Available | Negative | 1892076 - 1892288 | 7592.61 |
| hypothetical protein | HMPREF1862_01809 | Not Available | Positive | 1892874 - 1893254 | 13925.6 |
| relaxase/mobilization nuclease domain protein | HMPREF1862_01810 | Not Available | Positive | 1893251 - 1894963 | 63530.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
