Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sortase family protein | HMPREF1862_01791 | Not Available | Positive | 1882003 - 1882758 | 27437.9 |
| hypothetical protein | HMPREF1862_01792 | Not Available | Positive | 1882746 - 1882892 | 5318.96 |
| hypothetical protein | HMPREF1862_01793 | Not Available | Positive | 1882893 - 1883069 | 6570.93 |
| nlpc/p60 family protein | HMPREF1862_01794 | Not Available | Positive | 1883069 - 1884655 | 55679.6 |
| hypothetical protein | HMPREF1862_01795 | Not Available | Positive | 1884655 - 1885575 | 31703.7 |
| hypothetical protein | HMPREF1862_01796 | Not Available | Positive | 1885579 - 1885854 | 10316.6 |
| hypothetical protein | HMPREF1862_01797 | Not Available | Positive | 1885917 - 1886105 | 7041.38 |
| fic family protein | HMPREF1862_01798 | Not Available | Positive | 1886102 - 1886773 | 25845.6 |
| hypothetical protein | HMPREF1862_01799 | Not Available | Positive | 1886786 - 1887046 | 9351.19 |
| putative dna protecting protein dpra | HMPREF1862_01800 | Not Available | Positive | 1887100 - 1887969 | 31760.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
