Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01781 | Not Available | Negative | 1874624 - 1874752 | 4186.07 |
| site-specific recombinase, phage integrase family | HMPREF1862_01782 | Not Available | Positive | 1874780 - 1875631 | 32367.2 |
| hypothetical protein | HMPREF1862_01783 | Not Available | Positive | 1875628 - 1875936 | 11379.7 |
| hypothetical protein | HMPREF1862_01784 | Not Available | Positive | 1875937 - 1876752 | 31020.5 |
| putative sporulation initiation inhibitor protein soj | HMPREF1862_01785 | Not Available | Positive | 1876758 - 1877549 | 28305.8 |
| hypothetical protein | HMPREF1862_01786 | Not Available | Positive | 1877542 - 1877880 | 12390.9 |
| hypothetical protein | HMPREF1862_01787 | Not Available | Positive | 1877941 - 1878363 | 14763.2 |
| hypothetical protein | HMPREF1862_01788 | Not Available | Positive | 1878388 - 1878855 | 16377.4 |
| lpxtg-motif protein cell wall anchor domain protein | HMPREF1862_01789 | Not Available | Positive | 1878947 - 1881815 | 103113.0 |
| hypothetical protein | HMPREF1862_01790 | Not Available | Negative | 1881788 - 1881910 | 4276.38 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
