Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00160 | Not Available | Positive | 155234 - 155377 | 5222.4 |
| mgte intracellular domain protein | HMPREF1862_00161 | Not Available | Positive | 155388 - 156701 | 47850.7 |
| hypothetical protein | HMPREF1862_00162 | Not Available | Positive | 156685 - 157194 | 19838.4 |
| hypothetical protein | HMPREF1862_00163 | Not Available | Positive | 157341 - 158471 | 39455.9 |
| o-methyltransferase | HMPREF1862_00164 | Not Available | Positive | 158532 - 159173 | 22706.1 |
| hypothetical protein | HMPREF1862_00165 | Not Available | Positive | 159158 - 159292 | 5081.36 |
| tigr00730 family protein | HMPREF1862_00166 | Not Available | Positive | 159372 - 160067 | 24986.9 |
| hypothetical protein | HMPREF1862_00167 | Not Available | Positive | 160220 - 160414 | 6870.37 |
| basic membrane protein | HMPREF1862_00168 | Not Available | Negative | 160488 - 161699 | 42899.9 |
| putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | HMPREF1862_00169 | Not Available | Negative | 161696 - 162793 | 38823.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
