Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal protein s8 | HMPREF1862_01771 | Not Available | Negative | 1869296 - 1869694 | 14274.6 |
| ribosomal protein l5 | HMPREF1862_01772 | Not Available | Negative | 1869939 - 1870505 | 21164.5 |
| ribosomal protein l24 | HMPREF1862_01773 | Not Available | Negative | 1870505 - 1870924 | 15536.7 |
| ribosomal protein l14 | HMPREF1862_01774 | Not Available | Negative | 1870925 - 1871293 | 13443.6 |
| hypothetical protein | HMPREF1862_01775 | Not Available | Negative | 1871459 - 1871653 | 7204.53 |
| addiction module antitoxin, relb/dinj family | HMPREF1862_01776 | Not Available | Negative | 1871775 - 1872041 | 10005.1 |
| hypothetical protein | HMPREF1862_01777 | Not Available | Positive | 1872142 - 1872303 | 6187.56 |
| hypothetical protein | HMPREF1862_01778 | Not Available | Positive | 1872410 - 1872623 | 7476.13 |
| hypothetical protein | HMPREF1862_01779 | Not Available | Positive | 1872624 - 1872860 | 8550.15 |
| hypothetical protein | HMPREF1862_01780 | Not Available | Positive | 1873400 - 1874248 | 31628.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
