Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal protein l13 | HMPREF1862_01751 | Not Available | Negative | 1856448 - 1856894 | 16432.9 |
| hypothetical protein | HMPREF1862_01752 | Not Available | Negative | 1856966 - 1857088 | 4924.14 |
| trna pseudouridine synthase a | HMPREF1862_01753 | Not Available | Negative | 1857187 - 1858059 | 32203.7 |
| rok family protein | HMPREF1862_01754 | Not Available | Negative | 1858059 - 1858829 | 27921.0 |
| ribosomal protein l17 | HMPREF1862_01755 | Not Available | Negative | 1859009 - 1859584 | 21112.8 |
| dna-directed rna polymerase, alpha subunit | HMPREF1862_01756 | Not Available | Negative | 1859642 - 1860436 | 28661.9 |
| 30s ribosomal protein s11 | HMPREF1862_01757 | Not Available | Negative | 1860806 - 1861204 | 14102.0 |
| 30s ribosomal protein s13 | HMPREF1862_01758 | Not Available | Negative | 1861250 - 1861627 | 14295.4 |
| ribosomal protein l36 | HMPREF1862_01759 | Not Available | Negative | 1861755 - 1861868 | 4344.59 |
| translation initiation factor if-1 | HMPREF1862_01760 | Not Available | Negative | 1861912 - 1862133 | 8426.27 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
