Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01741 | Not Available | Negative | 1846502 - 1846663 | 6369.92 |
| ribosomal-protein-alanine acetyltransferase | HMPREF1862_01742 | Not Available | Negative | 1846660 - 1847145 | 17269.9 |
| universal bacterial protein yeaz | HMPREF1862_01743 | Not Available | Negative | 1847153 - 1847848 | 24022.9 |
| hydrolase, p-loop family | HMPREF1862_01744 | Not Available | Negative | 1847857 - 1848399 | 19379.9 |
| alanine racemase | HMPREF1862_01745 | Not Available | Negative | 1848408 - 1849571 | 41360.4 |
| putative yjef domain protein | HMPREF1862_01746 | Not Available | Negative | 1849584 - 1851206 | 55575.9 |
| glutamine-fructose-6-phosphate transaminase | HMPREF1862_01747 | Not Available | Negative | 1851231 - 1853177 | 69867.0 |
| phosphoglucosamine mutase | HMPREF1862_01748 | Not Available | Positive | 1853354 - 1854694 | 47231.4 |
| pantothenate kinase | HMPREF1862_01749 | Not Available | Positive | 1854808 - 1855812 | 38103.4 |
| ribosomal protein s9 | HMPREF1862_01750 | Not Available | Negative | 1855929 - 1856420 | 17720.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
