Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad/nadp octopine/nopaline dehydrogenase | HMPREF1862_01721 | Not Available | Negative | 1820589 - 1821662 | 39255.8 |
| aminotransferase, class i/ii | HMPREF1862_01722 | Not Available | Negative | 1821666 - 1823498 | 68886.1 |
| hypothetical protein | HMPREF1862_01723 | Not Available | Positive | 1824341 - 1824967 | 23867.4 |
| hypothetical protein | HMPREF1862_01724 | Not Available | Negative | 1825124 - 1827208 | 77813.0 |
| hypothetical protein | HMPREF1862_01725 | Not Available | Negative | 1827317 - 1828456 | 43142.8 |
| glycosyltransferase, group 2 family protein | HMPREF1862_01726 | Not Available | Negative | 1828482 - 1829597 | 42742.9 |
| glycosyltransferase, group 2 family protein | HMPREF1862_01727 | Not Available | Negative | 1829840 - 1830754 | 33906.1 |
| oxidoreductase, aldo/keto reductase family protein | HMPREF1862_01728 | Not Available | Positive | 1830901 - 1831878 | 35748.9 |
| thiamine pyrophosphate enzyme, central domain protein | HMPREF1862_01729 | Not Available | Negative | 1832043 - 1833944 | 69516.3 |
| myo-inositol catabolism protein iolb | HMPREF1862_01730 | Not Available | Negative | 1833947 - 1834837 | 32735.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
