Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase, group 2 family protein | HMPREF1862_01711 | Not Available | Negative | 1808194 - 1808868 | 24691.7 |
| licd family protein | HMPREF1862_01712 | Not Available | Negative | 1809051 - 1809899 | 32145.7 |
| licd family protein | HMPREF1862_01713 | Not Available | Negative | 1809917 - 1810735 | 31325.8 |
| hypothetical protein | HMPREF1862_01714 | Not Available | Negative | 1810889 - 1812019 | 41265.4 |
| putative atp synthase f0, a subunit | HMPREF1862_01715 | Not Available | Positive | 1812236 - 1813477 | 45472.6 |
| glycosyltransferase, group 1 family protein | HMPREF1862_01716 | Not Available | Positive | 1813566 - 1814654 | 40359.3 |
| hypothetical protein | HMPREF1862_01717 | Not Available | Negative | 1814845 - 1815687 | 30351.6 |
| hypothetical protein | HMPREF1862_01718 | Not Available | Negative | 1815785 - 1817290 | 55636.1 |
| mboat family protein | HMPREF1862_01719 | Not Available | Negative | 1817309 - 1818766 | 53996.1 |
| peptidoglycan binding domain protein | HMPREF1862_01720 | Not Available | Negative | 1818766 - 1820502 | 63141.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
