Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01681 | Not Available | Positive | 1777132 - 1777956 | 29482.6 |
| methionine aminopeptidase, type i | HMPREF1862_01682 | Not Available | Positive | 1778085 - 1778996 | 33278.7 |
| putative polyphosphate--glucose phosphotransferase | HMPREF1862_01683 | Not Available | Positive | 1779000 - 1779758 | 26867.1 |
| hypothetical protein | HMPREF1862_01684 | Not Available | Negative | 1779946 - 1780812 | 29893.2 |
| hypothetical protein | HMPREF1862_01685 | Not Available | Negative | 1780844 - 1780969 | 4280.45 |
| fumarate hydratase | HMPREF1862_01686 | Not Available | Positive | 1780984 - 1782384 | 49734.2 |
| hypothetical protein | HMPREF1862_01687 | Not Available | Negative | 1782392 - 1784023 | 59673.2 |
| putative exodeoxyribonuclease iii | HMPREF1862_01688 | Not Available | Negative | 1784013 - 1784858 | 31491.8 |
| basic membrane protein | HMPREF1862_01689 | Not Available | Negative | 1784885 - 1785994 | 38287.5 |
| tetrahydrofolate dehydrogenase/cyclohydrolase, nad(p)-binding domain protein | HMPREF1862_01690 | Not Available | Negative | 1786009 - 1786911 | 31898.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
