Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exonuclease sbccd, d subunit | HMPREF1862_00150 | Not Available | Positive | 143230 - 144477 | 46219.8 |
| exonuclease sbccd, c subunit | HMPREF1862_00151 | Not Available | Positive | 144478 - 147552 | 114159.0 |
| iron dependent repressor, dna binding domain protein | HMPREF1862_00152 | Not Available | Negative | 147584 - 148279 | 25303.6 |
| vitamin k epoxide reductase family protein | HMPREF1862_00153 | Not Available | Negative | 148295 - 148720 | 15319.2 |
| citrate (si)-synthase | HMPREF1862_00154 | Not Available | Negative | 149075 - 150415 | 50059.2 |
| succinyldiaminopimelate transaminase | HMPREF1862_00155 | Not Available | Negative | 150520 - 151686 | 41926.8 |
| putative ferredoxin | HMPREF1862_00156 | Not Available | Negative | 151769 - 152095 | 12014.9 |
| hypothetical protein | HMPREF1862_00157 | Not Available | Positive | 152133 - 152366 | 8527.62 |
| gtp-binding protein typa | HMPREF1862_00158 | Not Available | Negative | 152392 - 154350 | 71308.4 |
| hypothetical protein | HMPREF1862_00159 | Not Available | Negative | 154431 - 155204 | 27773.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
