Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01671 | Not Available | Negative | 1766502 - 1766771 | 9518.28 |
| hypothetical protein | HMPREF1862_01672 | Not Available | Negative | 1766768 - 1767001 | 8692.8 |
| hypothetical protein | HMPREF1862_01673 | Not Available | Negative | 1766995 - 1767261 | 9376.51 |
| hypothetical protein | HMPREF1862_01674 | Not Available | Positive | 1767445 - 1768227 | 27355.9 |
| scp-like protein | HMPREF1862_01675 | Not Available | Negative | 1768554 - 1772087 | 124629.0 |
| Trna-asn | Not Available | Not Available | Positive | 1772347 - 1772418 | Not Available |
| hypothetical protein | HMPREF1862_01677 | Not Available | Negative | 1772457 - 1772993 | 20354.2 |
| Trna-met | Not Available | Not Available | Positive | 1773032 - 1773109 | Not Available |
| phenylalanine--trna ligase, beta subunit | HMPREF1862_01679 | Not Available | Negative | 1773201 - 1775849 | 94503.9 |
| phenylalanine--trna ligase, alpha subunit | HMPREF1862_01680 | Not Available | Negative | 1775852 - 1776979 | 41087.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
