Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dead/deah box helicase | HMPREF1862_01651 | Not Available | Positive | 1746150 - 1748819 | 98924.5 |
| pyridoxal phosphate enzyme, yggs family | HMPREF1862_01652 | Not Available | Positive | 1748872 - 1749594 | 26486.9 |
| hypothetical protein | HMPREF1862_01653 | Not Available | Negative | 1749614 - 1750906 | 46788.4 |
| hypothetical protein | HMPREF1862_01654 | Not Available | Positive | 1750974 - 1751123 | 5435.57 |
| acetyltransferase, gnat family | HMPREF1862_01655 | Not Available | Negative | 1751141 - 1751704 | 20762.7 |
| molybdenum cofactor synthesis domain protein | HMPREF1862_01656 | Not Available | Negative | 1751837 - 1753048 | 42626.3 |
| 5-formyltetrahydrofolate cyclo-ligase | HMPREF1862_01657 | Not Available | Positive | 1753155 - 1753775 | 23109.9 |
| hypothetical protein | HMPREF1862_01658 | Not Available | Negative | 1753815 - 1753946 | 4968.03 |
| putative flp pilus assembly protein cpab | HMPREF1862_01659 | Not Available | Positive | 1754024 - 1754698 | 23229.0 |
| large conductance mechanosensitive channel protein | HMPREF1862_01660 | Not Available | Positive | 1754718 - 1755155 | 15516.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
