Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| argininosuccinate lyase | HMPREF1862_01641 | Not Available | Negative | 1734936 - 1736363 | 51267.1 |
| argininosuccinate synthase | HMPREF1862_01642 | Not Available | Negative | 1736365 - 1737573 | 44448.6 |
| putative succinylornithine transaminase | HMPREF1862_01643 | Not Available | Negative | 1737576 - 1738823 | 43492.7 |
| acetylglutamate kinase | HMPREF1862_01644 | Not Available | Negative | 1738816 - 1739712 | 31471.4 |
| glutamate n-acetyltransferase/amino-acid acetyltransferase | HMPREF1862_01645 | Not Available | Negative | 1739709 - 1740890 | 40710.4 |
| n-acetyl-gamma-glutamyl-phosphate reductase | HMPREF1862_01646 | Not Available | Negative | 1740887 - 1741945 | 36770.0 |
| hypothetical protein | HMPREF1862_01647 | Not Available | Negative | 1742165 - 1742653 | 18068.7 |
| hypothetical protein | HMPREF1862_01648 | Not Available | Positive | 1742730 - 1743734 | 37547.0 |
| phosphatidylcholine synthase family protein | HMPREF1862_01649 | Not Available | Negative | 1743727 - 1744524 | 30409.5 |
| amino acid carrier protein | HMPREF1862_01650 | Not Available | Negative | 1744606 - 1746084 | 51858.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
