Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endopeptidase clp | HMPREF1862_01631 | Not Available | Positive | 1727485 - 1728369 | 31559.1 |
| phage major capsid protein, hk97 family | HMPREF1862_01632 | Not Available | Positive | 1728395 - 1729615 | 44433.2 |
| phage dna packaging protein | HMPREF1862_01633 | Not Available | Positive | 1729645 - 1729962 | 11854.0 |
| putative phage head-tail adaptor | HMPREF1862_01634 | Not Available | Positive | 1729978 - 1730310 | 12062.6 |
| phage protein, hk97 gp10 family | HMPREF1862_01635 | Not Available | Positive | 1730310 - 1730747 | 15475.5 |
| hypothetical protein | HMPREF1862_01636 | Not Available | Positive | 1730744 - 1731091 | 12879.1 |
| hypothetical protein | HMPREF1862_01637 | Not Available | Negative | 1731088 - 1731353 | 9258.49 |
| tyrosine--trna ligase | HMPREF1862_01638 | Not Available | Negative | 1731643 - 1732908 | 46575.1 |
| hypothetical protein | HMPREF1862_01639 | Not Available | Negative | 1733037 - 1734104 | 36353.2 |
| hydrolase, nudix family | HMPREF1862_01640 | Not Available | Positive | 1734188 - 1734892 | 25899.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
