Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron/manganese abc transporter, periplasmic iron/manganese-binding protein | HMPREF1862_01621 | Not Available | Negative | 1719916 - 1720854 | 33996.2 |
| anticodon-binding domain protein | HMPREF1862_01622 | Not Available | Negative | 1720944 - 1721753 | 29582.5 |
| hypothetical protein | HMPREF1862_01623 | Not Available | Positive | 1721897 - 1722316 | 15461.5 |
| hypothetical protein | HMPREF1862_01624 | Not Available | Positive | 1722405 - 1722620 | 8335.67 |
| hypothetical protein | HMPREF1862_01625 | Not Available | Positive | 1722614 - 1723066 | 16827.3 |
| hypothetical protein | HMPREF1862_01626 | Not Available | Positive | 1723173 - 1723508 | 12512.6 |
| hypothetical protein | HMPREF1862_01627 | Not Available | Positive | 1723687 - 1723980 | 10592.4 |
| putative phage terminase, large subunit | HMPREF1862_01628 | Not Available | Positive | 1724056 - 1725660 | 60459.7 |
| hypothetical protein | HMPREF1862_01629 | Not Available | Negative | 1725646 - 1726116 | 17787.6 |
| phage portal protein, hk97 family | HMPREF1862_01630 | Not Available | Positive | 1726172 - 1727488 | 49092.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
