Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01611 | Not Available | Positive | 1711944 - 1712423 | 18505.6 |
| hnh endonuclease domain protein | HMPREF1862_01612 | Not Available | Positive | 1712555 - 1712932 | 14513.3 |
| hypothetical protein | HMPREF1862_01613 | Not Available | Positive | 1713225 - 1713761 | 19503.1 |
| hypothetical protein | HMPREF1862_01614 | Not Available | Negative | 1713784 - 1714002 | 7287.0 |
| methionine adenosyltransferase | HMPREF1862_01615 | Not Available | Positive | 1714101 - 1715291 | 42807.9 |
| dna (cytosine-5-)-methyltransferase | HMPREF1862_01616 | Not Available | Positive | 1715263 - 1716519 | 46462.4 |
| c-5 cytosine-specific dna methylase | HMPREF1862_01617 | Not Available | Positive | 1716523 - 1717734 | 43891.9 |
| hypothetical protein | HMPREF1862_01618 | Not Available | Positive | 1717734 - 1718213 | 16306.7 |
| putative iron/manganese abc transporter, permease protein | HMPREF1862_01619 | Not Available | Negative | 1718223 - 1719116 | 31915.1 |
| putative manganese transport system atp-binding protein mnta | HMPREF1862_01620 | Not Available | Negative | 1719113 - 1719919 | 28500.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
