Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01601 | Not Available | Negative | 1702288 - 1703013 | 26424.9 |
| mutacin abc transporter, atp-binding protein mutf | HMPREF1862_01602 | Not Available | Negative | 1703010 - 1703774 | 28132.2 |
| putative sensory transduction protein regx3 | HMPREF1862_01603 | Not Available | Positive | 1703863 - 1704618 | 27808.8 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | HMPREF1862_01604 | Not Available | Positive | 1704656 - 1705987 | 49733.7 |
| hypothetical protein | HMPREF1862_01605 | Not Available | Negative | 1706220 - 1706402 | 6932.26 |
| bro family protein | HMPREF1862_01606 | Not Available | Positive | 1706688 - 1707500 | 30656.0 |
| hypothetical protein | HMPREF1862_01607 | Not Available | Positive | 1707497 - 1707955 | 17503.9 |
| phage/plasmid primase, p4 family domain protein | HMPREF1862_01608 | Not Available | Positive | 1707948 - 1710269 | 85598.5 |
| vrr-nuc domain protein | HMPREF1862_01609 | Not Available | Positive | 1710327 - 1710608 | 10076.5 |
| protein, snf2 family | HMPREF1862_01610 | Not Available | Positive | 1710589 - 1711947 | 50782.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
