Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00140 | Not Available | Negative | 131203 - 132243 | 37285.2 |
| hypothetical protein | HMPREF1862_00141 | Not Available | Negative | 132236 - 133594 | 48501.2 |
| oxoglutarate dehydrogenase (succinyl-transferring), e1 component | HMPREF1862_00142 | Not Available | Positive | 133829 - 137557 | 138164.0 |
| hypothetical protein | HMPREF1862_00143 | Not Available | Negative | 137842 - 138129 | 10840.8 |
| rna polymerase sigma-70 factor | HMPREF1862_00144 | Not Available | Negative | 138129 - 138836 | 26500.3 |
| tat pathway signal sequence domain protein | HMPREF1862_00145 | Not Available | Positive | 138922 - 139308 | 13613.7 |
| putative 3-phosphoshikimate 1-carboxyvinyltransferase | HMPREF1862_00146 | Not Available | Positive | 139471 - 140640 | 41268.0 |
| ribosome small subunit-dependent gtpase a | HMPREF1862_00147 | Not Available | Positive | 140627 - 141628 | 35783.1 |
| histidinol-phosphate phosphatase hisn | HMPREF1862_00148 | Not Available | Negative | 141590 - 142381 | 28969.4 |
| putative 3-dehydroquinate dehydratase, type i | HMPREF1862_00149 | Not Available | Negative | 142383 - 143177 | 28383.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
