Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01570 | Not Available | Positive | 1676258 - 1676494 | 8821.59 |
| dihydropteroate synthase | HMPREF1862_01572 | Not Available | Positive | 1676430 - 1677281 | 30640.6 |
| hypothetical protein | HMPREF1862_01574 | Not Available | Negative | 1677211 - 1677483 | 10275.3 |
| acetyltransferase, gnat family | HMPREF1862_01573 | Not Available | Positive | 1677409 - 1677909 | 18311.7 |
| hypothetical protein | HMPREF1862_01575 | Not Available | Negative | 1677878 - 1678387 | 18764.6 |
| thrombospondin type 3 repeat-containing domain protein | HMPREF1862_01576 | Not Available | Negative | 1678389 - 1680939 | 90355.1 |
| groes-like protein | HMPREF1862_01577 | Not Available | Positive | 1681406 - 1682452 | 36948.3 |
| ribokinase | HMPREF1862_01578 | Not Available | Negative | 1682840 - 1683742 | 31982.2 |
| hypothetical protein | HMPREF1862_01579 | Not Available | Negative | 1683745 - 1684767 | 37868.9 |
| l-fucose:h+ symporter permease | HMPREF1862_01580 | Not Available | Negative | 1684767 - 1686167 | 51402.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
