Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_01561 | Not Available | Negative | 1667170 - 1667292 | 4575.75 |
| lpxtg-motif protein cell wall anchor domain protein | HMPREF1862_01562 | Not Available | Positive | 1667385 - 1669130 | 62996.0 |
| choline/ethanolamine kinase | HMPREF1862_01563 | Not Available | Negative | 1669181 - 1670968 | 68484.8 |
| hypothetical protein | HMPREF1862_01564 | Not Available | Negative | 1671459 - 1671878 | 15768.7 |
| hypothetical protein | HMPREF1862_01565 | Not Available | Negative | 1672145 - 1672410 | 9361.67 |
| helix-turn-helix domain of resolvase | HMPREF1862_01566 | Not Available | Positive | 1672411 - 1672707 | 11164.3 |
| integrase core domain protein | HMPREF1862_01567 | Not Available | Positive | 1672717 - 1674153 | 53821.9 |
| hypothetical protein | HMPREF1862_01568 | Not Available | Positive | 1674140 - 1675063 | 34387.6 |
| hypothetical protein | HMPREF1862_01569 | Not Available | Negative | 1675098 - 1675376 | 9647.78 |
| integron integrase | HMPREF1862_01571 | Not Available | Negative | 1675315 - 1676328 | 38399.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
