Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| potassium uptake protein, trkh family | HMPREF1862_01551 | Not Available | Positive | 1655370 - 1656725 | 48238.4 |
| trka protein | HMPREF1862_01552 | Not Available | Positive | 1656718 - 1657386 | 23679.7 |
| hypothetical protein | HMPREF1862_01553 | Not Available | Negative | 1657497 - 1657880 | 14200.8 |
| hypothetical protein | HMPREF1862_01554 | Not Available | Positive | 1657968 - 1658114 | 5503.82 |
| phosphoenolpyruvate carboxykinase | HMPREF1862_01555 | Not Available | Negative | 1658407 - 1660254 | 68759.7 |
| hypothetical protein | HMPREF1862_01556 | Not Available | Positive | 1660559 - 1661125 | 20543.2 |
| cobalt transport protein | HMPREF1862_01557 | Not Available | Positive | 1661125 - 1661934 | 29539.3 |
| abc transporter, atp-binding protein | HMPREF1862_01558 | Not Available | Positive | 1661931 - 1663394 | 52625.0 |
| abc transporter, atp-binding protein | HMPREF1862_01559 | Not Available | Positive | 1663408 - 1665222 | 65425.2 |
| abc transporter, atp-binding protein | HMPREF1862_01560 | Not Available | Positive | 1665191 - 1666990 | 65084.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
