Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-gln | Not Available | Not Available | Positive | 1642070 - 1642144 | Not Available |
| glutamate--trna ligase | HMPREF1862_01542 | Not Available | Negative | 1642246 - 1643706 | 54028.5 |
| aminotransferase, class i/ii | HMPREF1862_01543 | Not Available | Positive | 1643952 - 1645136 | 43492.1 |
| fah family protein | HMPREF1862_01544 | Not Available | Negative | 1645167 - 1645931 | 26169.4 |
| protein, snf2 family | HMPREF1862_01545 | Not Available | Positive | 1646239 - 1648680 | 89646.2 |
| hypothetical protein | HMPREF1862_01546 | Not Available | Negative | 1648631 - 1649164 | 20378.4 |
| nitroreductase family protein | HMPREF1862_01547 | Not Available | Positive | 1649503 - 1650087 | 22432.8 |
| transcriptional regulator, merr family | HMPREF1862_01548 | Not Available | Negative | 1650227 - 1651522 | 48196.6 |
| eco47ii restriction endonuclease | HMPREF1862_01549 | Not Available | Negative | 1651579 - 1652280 | 26228.3 |
| hypothetical protein | HMPREF1862_01550 | Not Available | Negative | 1652645 - 1655149 | 91760.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
