Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcription elongation factor grea | HMPREF1862_01531 | Not Available | Negative | 1633313 - 1633789 | 17849.1 |
| channel protein, hemolysin iii family | HMPREF1862_01532 | Not Available | Negative | 1633928 - 1634620 | 25447.7 |
| di-trans,poly-cis-decaprenylcistransferase | HMPREF1862_01533 | Not Available | Positive | 1634855 - 1635535 | 25619.5 |
| hypothetical protein | HMPREF1862_01534 | Not Available | Negative | 1635540 - 1637138 | 57221.5 |
| hypothetical protein | HMPREF1862_01535 | Not Available | Negative | 1637246 - 1637737 | 18260.9 |
| hypothetical protein | HMPREF1862_01536 | Not Available | Negative | 1637817 - 1638734 | 32621.4 |
| Trna-leu | Not Available | Not Available | Positive | 1638888 - 1638964 | Not Available |
| na+/h+ antiporter nhaa | HMPREF1862_01538 | Not Available | Positive | 1639117 - 1640490 | 48553.9 |
| trna ligase class ii core domain protein | HMPREF1862_01539 | Not Available | Negative | 1640565 - 1641869 | 47625.2 |
| Trna-glu | Not Available | Not Available | Positive | 1641965 - 1642040 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
