Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative sporulation initiation inhibitor protein soj | HMPREF1862_01521 | Not Available | Negative | 1623896 - 1624732 | 30008.4 |
| hypothetical protein | HMPREF1862_01522 | Not Available | Negative | 1624888 - 1625046 | 5875.17 |
| tyrosine recombinase xerd | HMPREF1862_01523 | Not Available | Negative | 1625078 - 1626031 | 34390.0 |
| hypothetical protein | HMPREF1862_01524 | Not Available | Positive | 1626156 - 1626443 | 10463.4 |
| gtp-binding protein ychf | HMPREF1862_01525 | Not Available | Negative | 1626627 - 1627703 | 39172.8 |
| putative esterase | HMPREF1862_01526 | Not Available | Negative | 1627762 - 1629222 | 52588.3 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | HMPREF1862_01527 | Not Available | Negative | 1629216 - 1630220 | 36555.5 |
| exodeoxyribonuclease vii, large subunit | HMPREF1862_01528 | Not Available | Positive | 1630418 - 1631566 | 41489.1 |
| exodeoxyribonuclease vii, small subunit | HMPREF1862_01529 | Not Available | Positive | 1631576 - 1631791 | 7959.33 |
| hypothetical protein | HMPREF1862_01530 | Not Available | Positive | 1631794 - 1633269 | 54625.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
